vibpsb/ksrates repository overview

⁠ksrates

ksrates is a tool to position whole-genome duplications* (WGDs) relative to speciation events using substitution-rate-adjusted mixed paralog–ortholog distributions of synonymous substitutions per synonymous site (KS).

This image contains all the dependencies that are needed to run the pipeline using Nexflow. The repository for this project can be found on GitHub⁠. If you have any questions regarding this image, please open an issue⁠.

⁠Usage

Executing a ksrates command using the Docker container the syntax is:

docker run --rm -v $PWD:/temp -w /temp vibpsb/ksrates ksrates [OPTIONS] COMMAND [ARGS]...