pennlinc/afni_refacer repository overview

⁠afni_refacer

afni_refacer for refacing T1w (and/or T2w) image

1. Docker image
   The docker/singularity image can be pulled from
   pennlinc/afni_refacer⁠ .
   Other option is to build from the dockerfile directly::

   docker build -t afni_refacer:latest  - < Dockerfile

1. Refacing
   T1w or T2w can be refaced with the command below::

   docker run pennlinc/afni_refacer  \
        -input anat_T1w.nii.gz    \
        -mode_reface \
        -prefix anat_T1w_reface.nii.gz