pegi3s/r_network repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of R Project⁠ with the most common packages for R network analysis. The packages included in this image are:

• dplyr⁠ version 1.0.7.
• data.table⁠ version 1.14.2.
• caret⁠ version 6.0.90.
• ggplot2⁠ version 3.3.5.
• tidyr⁠ version 1.1.4.
• mlr3⁠ version 0.13.0.
• knitr⁠ version 1.36.
• rmarkdown⁠ version 2.11.
• stringr⁠ version 1.4.0.
• readr⁠ version 2.1.1.
• readxl⁠ version 1.3.1.
• purrr⁠ version 0.3.4.
• openxlsx⁠ version 4.2.4.
• tidytext⁠ version 0.3.2.
• gplots⁠ version 3.1.3.
• dendextend⁠ version 1.16.0
• igraph⁠ version 1.3.5
• networkD3⁠ version 0.4
• htmlwidgets⁠ version 1.6.1

⁠Using the R Project image in Linux

You should adapt and run the following command: docker run --rm -it -v /your/data/dir:/data pegi3s/r_network Rscript /data/script.R

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input files you want to analyze.
• script.R to the actual name of your script using any of the packages included in this image (i.e. containing library("igraph")).

To see the R Project help, just run docker run --rm pegi3s/r_network R --help.