This repository hosts MySQL database images for use with cBioPortal that are preloaded with studies.
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This repository hosts prebuilt MySQL database images for use with cBioPortal. These images come preloaded with study datasets, eliminating the need to manually import studies after launching the cBioPortal container.
# Pull docker image
docker pull cbioportal/mysql:<tag>
# Start the database and wait until you see the message in the logs [Server] /usr/sbin/mysqld: ready for connections.
docker run --name cbioportal-mysql -p 3306:3306 cbioportal/mysql:<tag>
# Connect to database in another terminal (protocol flag is important)
mysql -h localhost -P 3306 -u root -psomepassword --protocol=tcp
# Later on, when you wanna run the database container again, you can simply do the following instead of the full docker run command
docker start cbioportal-mysql
To see which studies are included in a specific image, use docker inspect on the tag.
docker image inspect --format='{{json .Config.Labels}}' <tag>
Content type
Image
Digest
sha256:4160b034e…
Size
274.4 MB
Last updated
12 months ago
docker pull cbioportal/mysql:8.0-cbioportal-v6.2.0Pulls:
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