biocontainers/mtblisa repository overview

⁠mtblisa: MetaboLights-ISA slicer

Version: 1.0.0

⁠Short Description

A container image definition for the mtbls module of the ISA API

⁠Description

The ISA API is a Python 3 library that can create, manipulate, and convert ISA formatted content. The mtbls.py module provides the functionality to access MetaboLights ISA-Tab data, wrapped up as the mtblisa container.

⁠Key features

• Retrieve metadata from MetaboLights studies in the ISA-Tab and JSON formats
• Query MetaboLights studies for factors used.
• Query MetaboLights studies for factor values used for a given factor.
• Query MetaboLights studies to retrieve data file names filtered on factor and factor value.

⁠Functionality

• Other Tools

⁠Approaches

⁠Instrument Data Types

⁠Tool Authors

• ISA Team⁠

⁠Container Contributors

• David Johnson⁠ (University of Oxford)

⁠Website

• https://github.com/ISA-tools/isa-api⁠

⁠Git Repository

• https://github.com/phnmnl/container-mtblisa.git⁠

⁠Installation

For local individual installation:

docker pull docker-registry.phenomenal-h2020.eu/phnmnl/mtblisa

⁠Usage Instructions

For direct docker usage:

docker run docker-registry.phenomenal-h2020.eu/phnmnl/mtblisa ...

⁠Publications

• Haug, K., Salek, R. M., Conesa, P., Hastings, J., de Matos, P., Rijnbeek, M., ... & Maguire, E. (2012). MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic acids research, gks1004.

• Sansone, Susanna-Assunta, Rocca-Serra, Philippe, Gonzalez-Beltran, Alejandra, Johnson, David, & ISA Community. (2016, October 28). ISA Model and Serialization Specifications 1.0. Zenodo. http://doi.org/10.5281/zenodo.163640⁠