bioconductor/bioc-redis repository overview

⁠BiocKubeInstall

Internal Bioconductor package used to create binaries for docker images produced by Bioconductor. The package installation and binary creation is parallelized on a Kubernetes cluster launched (at the moment) on a Kubernetes cluster using GKE.

The package works in sync with the Bioconductor/k8sredis kubernetes application.

⁠Author

Nitesh Turaga - [email protected]⁠

Martin Morgan

⁠Links

k8sredis: www.github.com/Bioconductor/k8sredis⁠

Vignette: BiocKubeInstall_Tutorial⁠

⁠Components

1. inst/helm-chart : helm chart for k8s app

2. inst/docker : docker images used inside the k8s application

3. BiocKubeInstall R/ : Code which runs on the manager and worker replica sets.

4. Github Actions: Start cluster and deploy to cluster, delete cluster, and test binary package installs 3 times a week.

⁠Usage for AnVIL platform and all bioconductor_docker inherited images

BiocManager::install('Bioconductor/AnVIL')

## Should show the Google storage api as the top result
AnVIL::repositories()

AnVIL::install('Rhtslib')