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biocontainers/galaxy-rna-seq-training:readme-patching

Manifest digest

sha256:3362bdaf1b5a45376dba274365046e99e6804fd823bc1d4c13b4b5777288b637

OS/ARCH

linux/amd64

Compressed size

4.21 GB

Last pushed

about 9 years by biocontainers

Type

Image

Manifest digest

sha256:3362bdaf1b5a45376dba274365046e99e6804fd823bc1d4c13b4b5777288b637

Image Layers

Image Layers

1ADD file ... in / 62.66 MB
2/bin/sh -c set -xe &&69.89 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*365 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'682 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update182.99 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=dev GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&408.81 KB
16/bin/sh -c groupadd -r postgres2.05 KB
17/bin/sh -c apt-get -qq update183.23 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.58 KB
19ADD file ... in /home/galaxy/.bashrc 1.7 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&29.33 MB
21/bin/sh -c su $GALAXY_USER -c21.77 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 435 B
24ADD dir:0b9a9cb2e665f2a0a2e7179733b54c50680eb8636d657c663a1302522492fa0d in /ansible/roles 39.42 KB
25ADD file ... in /ansible/provision.yml 219 B
26ADD file ... in /ansible/postgresql_provision.yml 348 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&67.29 MB
28/bin/sh -c mkdir /shed_tools &&182 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32/bin/sh -c ./scripts/common_startup.sh && 2.05 MB
33ADD file ... in /etc/galaxy/web/welcome_image.png 49.54 KB
34ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB
35USER [root]0 B
36ADD file ... in /usr/local/bin/setup_postgresql.py 1.28 KB
37/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.91 MB
38ADD file ... in /home/galaxy/tool_sheds_conf.xml 352 B
39ADD file ... in /usr/bin/add-tool-shed 575 B
40ADD file ... in /usr/bin/startup_lite 791 B
41ADD file ... in /usr/bin/install-tools 906 B
42ADD file ... in /usr/bin/install-biojs 341 B
43/bin/sh -c chmod +x /usr/bin/install-tools1.95 KB
44/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >223 B
45ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
46EXPOSE 21/tcp0 B
47EXPOSE 80/tcp0 B
48EXPOSE 443/tcp0 B
49EXPOSE 8800/tcp0 B
50EXPOSE 9002/tcp0 B
51VOLUME [/export/ /data/ /var/lib/docker]0 B
52ADD file ... in /usr/bin/install_db.sh 266 B
53/bin/sh -c chmod +x /usr/bin/install_db.sh281 B
54CMD ["/usr/bin/startup"]0 B
55MAINTAINER Björn A. Grüning,0 B
56ENV GALAXY_CONFIG_BRAND=NGS-preprocessing0 B
57ENV ENABLE_TTS_INSTALL=True0 B
58ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True0 B
59ADD file ... in /galaxy-central/tools.yaml 1.25 KB
60/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.1 GB
61MAINTAINER Björn A. Grüning,0 B
62ENV GALAXY_CONFIG_BRAND=RNA-Seq GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True0 B
63ADD file ... in /galaxy-central/tools.yaml 1.27 KB
64/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&969.42 MB
65MAINTAINER Björn A. Grüning,0 B
66ENV GALAXY_CONFIG_BRAND=RNA-Seq training0 B
67ADD file ... in data_manager_rna_seq.yaml 698 B
68/bin/sh -c startup_lite && 1.64 GB

Command

ADD file:cd830d3aacc66aa750a588e56d835663908f7fbb855cb96d00aa01feb9567948 in /