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mgibio/rnaseq:v1.2.11-bionic

Machine learning & AI
Data science
Manifest digest

sha256:50b9c46589cb2abc923306530e9768cb6bcb4e3548bd3fe2a73bd1c1e98bce46

OS/ARCH

linux/amd64

Compressed size

542.05 MB

Last pushed

over 1 year by ebelter

Type

Image

Manifest digest

sha256:50b9c46589cb2abc923306530e9768cb6bcb4e3548bd3fe2a73bd1c1e98bce46

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.53 KB
3/bin/sh -c set -xe &&854 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Otto Jolanki0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8/bin/sh -c apt-get update &&329.27 MB
9/bin/sh -c pip3 install pandas==0.24.252.38 MB
10/bin/sh -c pip3 install pysam==0.15.319.8 MB
11/bin/sh -c mkdir /data133 B
12/bin/sh -c mkdir /software135 B
13WORKDIR /software0 B
14ENV PATH=/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
15/bin/sh -c wget http://zlib.net/zlib-1.2.12.tar.gz &&2.88 MB
16/bin/sh -c cd zlib-1.2.12 &&685.13 KB
17/bin/sh -c wget https://tukaani.org/xz/xz-5.2.3.tar.gz &&2.85 MB
18/bin/sh -c cd xz-5.2.3 &&3.02 MB
19ARG STAR_VERSION=2.7.9a0 B
20|1 STAR_VERSION=2.7.9a /bin/sh -c wget20.48 MB
21|1 STAR_VERSION=2.7.9a /bin/sh -c cd4.23 MB
22ENV PATH=/software/STAR-2.7.9a/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
23|1 STAR_VERSION=2.7.9a /bin/sh -c wget12.76 MB
24ENV PATH=/software/kallisto_linux-v0.44.0:/software/STAR-2.7.9a/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
25|1 STAR_VERSION=2.7.9a /bin/sh -c git1.9 MB
26|1 STAR_VERSION=2.7.9a /bin/sh -c wget9.75 MB
27|1 STAR_VERSION=2.7.9a /bin/sh -c unzip8.7 MB
28|1 STAR_VERSION=2.7.9a /bin/sh -c cd11.59 MB
29ENV PATH=/software/RSEM-1.2.31:/software/kallisto_linux-v0.44.0:/software/STAR-2.7.9a/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30|1 STAR_VERSION=2.7.9a /bin/sh -c git8.71 MB
31ENV PATH=/software/RSEM-1.2.31:/software/kallisto_linux-v0.44.0:/software/STAR-2.7.9a/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/software/kentutils_v385_bin_bulkrna/0 B
32|1 STAR_VERSION=2.7.9a /bin/sh -c pip327.56 MB
33|1 STAR_VERSION=2.7.9a /bin/sh -c mkdir179 B
34COPY dir:5d87577d84e4f85ce1b772b1af392d1770e8793f96aa072f1d6d47d95f411914 in rna-seq-pipeline/src 18.8 KB
35ENV PATH=/software/rna-seq-pipeline/src:/software/RSEM-1.2.31:/software/kallisto_linux-v0.44.0:/software/STAR-2.7.9a/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/software/kentutils_v385_bin_bulkrna/0 B
36ARG GIT_COMMIT_HASH0 B
37ENV GIT_HASH=0 B
38ARG BRANCH0 B
39ENV BUILD_BRANCH=0 B
40ARG BUILD_TAG0 B
41ENV MY_TAG=0 B

Command

ADD file:53f100793e6c0adfca99977a42bb65cb7971c26e4d6e4499d1c30a1f51f06854 in /