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mgibio/rnaseq:1.0.0

Machine learning & AI
Data science
Manifest digest

sha256:5fea79393871c4c7068457663d87e263cfc6cde086ea5c0411f6130ded8e16df

OS/ARCH

linux/amd64

Compressed size

1.07 GB

Last pushed

over 6 years by mgibio

Type

Image

Manifest digest

sha256:5fea79393871c4c7068457663d87e263cfc6cde086ea5c0411f6130ded8e16df

Image Layers

Image Layers

1ADD file ... in / 42.1 MB
2/bin/sh -c rm -rf /var/lib/apt/lists/*529 B
3/bin/sh -c set -xe &&846 B
4/bin/sh -c mkdir -p /run/systemd168 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Thomas B. Mooney0 B
7LABEL description=Image for tools0 B
8/bin/sh -c apt-get update -y291.13 MB
9ENV HTSLIB_INSTALL_DIR=/opt/htslib0 B
10WORKDIR /tmp0 B
11/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2 &&20.58 MB
12ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B
13WORKDIR /tmp0 B
14/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 &&4.58 MB
15/bin/sh -c mkdir /opt/hisat2/ 26.52 MB
16/bin/sh -c mkdir /opt/sambamba/ 2.83 MB
17/bin/sh -c mkdir /opt/picard/ 19.61 MB
18/bin/sh -c mkdir /opt/stringtie/ 1.39 MB
19/bin/sh -c mkdir -p /opt/flexbar/tmp295.44 KB
20/bin/sh -c pip install --upgrade17.96 MB
21/bin/sh -c ln -sf /usr/share/zoneinfo/America/Chicago342.8 KB
22/bin/sh -c mkdir /opt/kallisto &&11.15 MB
23ARG R_VERSION0 B
24ARG BUILD_DATE0 B
25ENV BUILD_DATE=2017-06-200 B
26ENV R_VERSION=3.4.00 B
27/bin/sh -c apt-get update &&651.91 MB
28ADD file ... in /tmp/ 208 B
29/bin/sh -c R -f /tmp/rpackages.R9.64 MB
30ADD file ... in /usr/src/ 676 B
31ADD file ... in /usr/bin/ 388 B
32/bin/sh -c chmod +x /usr/bin/sambamba_merge388 B
33/bin/sh -c cd / &&930 B

Command

ADD file:4eb02fc768cad452a37e8df30bbfcc728f3e6e7ca33af177fd4de06fd07c2098 in /