ensemblorg/ensembl-vep-training:release_98

Manifest digest

sha256:f54e80a627da8260b539732f5136597985a1b5ba8632303d40eac7c8a1705d89

OS/ARCH

linux/amd64

Compressed size

1.89 GB

Last pushed

over 6 years by athormann

Type

Image

Manifest digest

sha256:f54e80a627da8260b539732f5136597985a1b5ba8632303d40eac7c8a1705d89

Image Layers

Image Layers

1ADD file ... in / 25.45 MB

2/bin/sh -c [ -z "$(apt-get34.53 KB

3/bin/sh -c set -xe &&845 B

4/bin/sh -c mkdir -p /run/systemd162 B

5CMD ["/bin/bash"]0 B

6/bin/sh -c apt-get update &&93.68 MB

7ENV OPT=/opt/vep0 B

8ENV OPT_SRC=/opt/vep/src0 B

9ENV PERL5LIB_TMP=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B

10ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/opt/vep/src/bioperl-live0 B

11ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B

12ENV HTSLIB_DIR=/opt/vep/src/htslib0 B

13ENV MACHTYPE=x86_640 B

14ENV DEPS=/opt/vep/src0 B

15ENV PATH=/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

16ENV LANG_VAR=en_US.UTF-80 B

17/bin/sh -c useradd -r -m4.33 KB

18USER vep0 B

19COPY --chown=vep:vepdir:801d6a44ec3cf97bda460641dc227646e09658b713663ee785bee3aa249e0916 in /opt/vep/src 59.74 MB

20USER root0 B

21WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align/0 B

22/bin/sh -c perl Makefile.PL &&1.15 MB

23WORKDIR /opt/vep/src/ensembl-xs0 B

24/bin/sh -c perl Makefile.PL &&443.18 KB

25WORKDIR /opt/vep/src0 B

26/bin/sh -c ensembl-vep/travisci/build_c.sh && 51.08 MB

27ENV LC_ALL=en_US.UTF-80 B

28ENV LANG=en_US.UTF-80 B

29USER vep0 B

30ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B

31WORKDIR /opt/vep/src/ensembl-vep0 B

32/bin/sh -c echo >> $OPT/.profile4.13 MB

33ENV OPT_SRC_CACHE=/opt/vep/src/cache0 B

34ENV FASTA_FILE=Homo_sapiens.GRCh38.dna.chromosome.1.fa0 B

35ENV VEP_RELEASE=980 B

36WORKDIR /opt/vep/src0 B

37COPY --chown=vep:vepdir:e8dcc17d04d0379d43d64b867ca5a27dd7d6eede979987e724ee4117f833c3f7 in /opt/vep/src 1.59 GB

38/bin/sh -c gunzip "cache/homo_sapiens/$VEP_RELEASE""_GRCh38/$FASTA_FILE.gz" &&67.23 MB

39WORKDIR /opt/vep/src/ensembl-vep0 B

Command

ADD file:a48a5dc1b9dbfc632f6cf86fe27b770b63f07a115c98c4465dc184e303a4efa1 in /